BioPHP PHP for Bioinformatics


The aim of this site is to share knowledge by using a Wiki-like service: classes, functions
and minitools may be edited by registered users. More info here.


GenePHP - Download

Sequence Class
Sequence Database Class
Sequence Aligment Class
Restriction Enzyme Class
Miscellaneus Class

 

Mark's BioPHP
Lee Katz's biophp

 

 

 

Functions

Minitools - Download all minitools (.zip)

demo Sequence manipulation and data
demo Melting Temperature (Tm) Calculator
demo PCR Amplification
demo Microsatellite Repeats Finder
demo Find Palindromic Sequences
demo Alignment of DNA/Protein sequences
demo Restriction digest of DNA
demo DNA to protein
demo Protein to DNA
demo Microarray analysis: adaptive quantification
demo Protein sequence information
demo Reduced alphabets for proteins
demo Chaos Game Representation
demo GC-, AT-, KETO- and oligo-skews generator
demo Oligonucleotide Frequency
demo Oligonucleotides for distance among sequences
demo Random sequences
demo Useful formulas
Minitools for Stats - Download all (.zip)

BioPHP is an open source project (GNU GLP v.2 license)

Related sites

Open Bioinformatics Foundation
BioJava
Biopython
Bioperl
Bioruby
OBDA
DAS
MOBY
EMBOSS

 

Other sites

in silico simulation of
molecular biology experiments
(insilico.ehu.es)