BioPHP PHP for Bioinformatics The aim of this site is to share knowledge by using a Wiki-like service: classes, functions and minitools may be edited by registered users. More info here. GenePHP - Download Sequence Class Sequence Database Class Sequence Aligment Class Restriction Enzyme Class Miscellaneus Class   Mark's BioPHP Lee Katz's biophp       Functions Minitools - Download all minitools (.zip) Sequence manipulation and data Melting Temperature (Tm) Calculator PCR Amplification Microsatellite Repeats Finder Find Palindromic Sequences Alignment of DNA/Protein sequences Restriction digest of DNA DNA to protein Protein to DNA Microarray analysis: adaptive quantification Protein sequence information Reduced alphabets for proteins Chaos Game Representation GC-, AT-, KETO- and oligo-skews generator Oligonucleotide Frequency Oligonucleotides for distance among sequences Random sequences Useful formulas Minitools for Stats - Download all (.zip) BioPHP is an open source project (GNU GLP v.2 license)

Contact Related sites Open Bioinformatics Foundation BioJava Biopython Bioperl Bioruby OBDA DAS MOBY EMBOSS   Other sites in silico simulation of molecular biology experiments (insilico.ehu.eus) GScompare: oligonucleotide-based fast clustering of bacterial genomes.